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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 856ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
  • 1snATAC-seq
Assay category
  • 1401Transcription
  • 856DNA binding
  • 442DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 568February, 2021
  • 252November, 2017
  • 234May, 2021
  • 199June, 2019
  • 197August, 2017
  • 188May, 2020
  • 164July, 2018
  • 96August, 2021
  • 88October, 2019
  • 79July, 2019
  • 79November, 2018
  • 63May, 2019
  • 62December, 2017
  • 57September, 2018
  • 53November, 2019
  • 49April, 2018
  • 42April, 2019
  • 36October, 2018
  • 35February, 2023
  • 30December, 2018
  • 25May, 2024
  • 23February, 2018
  • 23January, 2019
  • 13March, 2020
  • 13October, 2017
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2March, 2019
  • 1July, 2025
  • 1March, 2023
Available data
  • 2566bam
  • 2522bigWig
  • 1401tsv
  • 1234bed narrowPeak
  • 850bigBed narrowPeak
  • 843fastq
  • 263bed broadPeak
  • 254bigBed broadPeak
  • 246bed bed3+
  • 111tagAlign
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tbi
Organism
  • 2713Homo sapiens
Biosample type
  • 1609tissue
  • 448cell line
  • 434primary cell
  • 225in vitro differentiated cells
  • 2stem cell
Organ
  • 568pancreas
  • 549connective tissue
  • 490liver
  • 423adipose tissue
  • 246epithelium
  • 227heart
  • 190kidney
  • 166vasculature
  • 163blood vessel
  • 122artery
  • 110brain
  • 83limb
  • 66bone element
  • 53blood
  • 53bodily fluid
  • 49musculature of body
  • 23nerve
  • 22embryo
  • 18ureter
  • 14spleen
  • 8skeleton
  • 7vein
  • 5eye
  • 1pericardium
Project
  • 2565AMP
  • 142T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2802hg19
  • 2718GRCh38
  • 5hg18
Lab
  • 2463AMP-T2D consortium
  • 140Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 25Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 2Stephen Parker, UMich
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
Audit category:
  • 177inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 51missing controlled_by
Audit category:
  • 37inconsistent control read length
  • 6inconsistent control run_type
  • 3inconsistent assembly
target.investigated_as!
  • narrow histone mark
BIOSAMPLE
ASSAY

2718 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
snATAC-seq
tissue
adipose tissue3822
islet of Langerhans260152216
liver1474921
kidney107513
bone tissue58
cell line
HepG2525511
smooth muscle cell of the coronary artery5248
GM1287853
EndoC_BH13371
H1-hESC8
primary cell
monocyte534413
pancreatic alpha cell1031312
pancreatic beta cell1031012
pancreatic acinar cell44512
pancreatic ductal cell46410
in vitro differentiated cells
cardiomyocytes593
adipocyte4361
neural progenitor cell7610
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm48
stem cell
hESC2
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