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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1277total RNA-seq
  • 818ChIP-seq
  • 234ATAC-seq
  • 207DNase-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 2Hi-C
Assay category
  • 1401Transcription
  • 818DNA binding
  • 441DNA accessibility
  • 17DNA methylation
  • 23D chromatin structure
Target of assay
  • 804histone modification
  • 803histone
  • transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 563February, 2021
  • 272May, 2021
  • 207May, 2020
  • 206June, 2019
  • 203August, 2017
  • 200October, 2019
  • 164July, 2018
  • 105August, 2021
  • 91May, 2019
  • 79July, 2019
  • 76November, 2017
  • 72September, 2018
  • 59April, 2019
  • 56November, 2019
  • 49April, 2018
  • 35December, 2017
  • 35February, 2023
  • 35May, 2024
  • 32October, 2018
  • 31February, 2018
  • 16March, 2020
  • 16November, 2018
  • 14October, 2017
  • 12January, 2019
  • 12May, 2023
  • 7August, 2020
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 3September, 2020
  • 2December, 2018
  • 2March, 2019
  • 1March, 2023
Available data
  • 2516bam
  • 2482bigWig
  • 1400tsv
  • 1207bed narrowPeak
  • 626bigBed narrowPeak
  • 539fastq
  • 246bed broadPeak
  • 239bed bed3+
  • 237tagAlign
  • 231bigBed broadPeak
  • 64xls
  • 17bed bedMethyl
  • 17bigBed bedMethyl
  • 2bed bed3
  • 1hdf5
  • 1hic
  • 1tagAlign bed3+
Organism
  • 2673Homo sapiens
Biosample type
  • 1766tissue
  • 527primary cell
  • 228in vitro differentiated cells
  • 155cell line
  • 3stem cell
Organ
  • 616pancreas
  • 526connective tissue
  • 407adipose tissue
  • 285epithelium
  • 249heart
  • 245liver
  • 214brain
  • 196kidney
  • 182vasculature
  • 179blood vessel
  • 123artery
  • 96limb
  • 66bone element
  • 53musculature of body
  • 31nerve
  • 26embryo
  • 18ureter
  • 12vein
  • 10spleen
  • 8skeleton
  • 5eye
  • 3blood
  • 3bodily fluid
  • 1pericardium
  • 1pituitary gland
Project
  • 2482AMP
  • 186T1D
  • 10HPAP
  • 1ITG
Genome assembly (visualization)
  • 2726hg19
  • 2679GRCh38
  • 5hg18
Lab
  • 2375AMP-T2D consortium
  • 180Kyle Gaulton, UCSD
  • 75Katalin Susztak, Upenn
  • 35Patrick T. Ellinor, Broad
  • 10Klaus Kaestner, Upenn
  • 1Bing Ren, UCSD
  • 1ITG
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 182inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 52missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 4inconsistent assembly
  • 1inconsistent control run_type
target.investigated_as!
  • transcription factor
BIOSAMPLE
ASSAY

2679 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
small RNA-seq
WGBS
Hi-C
tissue
adipose tissue38212
islet of Langerhans260182216
liver1473821
kidney207513
bone tissue58
primary cell
monocyte538413
pancreatic alpha cell1071312
pancreatic beta cell1071012
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes59
adipocyte4261
neural progenitor cell71310
cardiac precursors (cardiac muscle cell)191
pancreatic endoderm410
cell line
smooth muscle cell of the coronary artery528
EndoC_BH133121
HepG251611
H1-hESC8
Panc1611
stem cell
hESC3
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