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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 804ChIP-seq
Assay category
  • 804DNA binding
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 169October, 2019
  • 103August, 2017
  • 91May, 2019
  • 86May, 2021
  • 73November, 2017
  • 59April, 2019
  • 35May, 2024
  • 32September, 2018
  • 30December, 2017
  • 30October, 2018
  • 19June, 2019
  • 19May, 2020
  • 16August, 2021
  • 16February, 2018
  • 10November, 2019
  • 7January, 2019
  • 6October, 2017
  • 3March, 2020
Available data
  • 801bigWig
  • 787bed narrowPeak
  • 767bam
  • 390bigBed narrowPeak
  • 237tagAlign
  • 226fastq
  • 40bed broadPeak
  • 26bigBed broadPeak
  • 25bed bed3+
  • 1tagAlign bed3+
Organism
  • 798Homo sapiens
Biosample type
  • 494tissue
  • 198primary cell
  • 78in vitro differentiated cells
  • 32cell line
  • 2stem cell
Organ
  • 168brain
  • 136pancreas
  • 96heart
  • 88epithelium
  • 70liver
  • 66vasculature
  • 65blood vessel
  • 47limb
  • 34connective tissue
  • 30kidney
  • 24nerve
  • 20artery
  • 13musculature of body
  • 11embryo
  • 10vein
  • 6spleen
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 716AMP
  • 88T1D
Genome assembly (visualization)
  • 804GRCh38
  • 784hg19
Lab
  • 685AMP-T2D consortium
  • 84Kyle Gaulton, UCSD
  • 35Patrick T. Ellinor, Broad
Audit category:
  • 33inconsistent ontology term
Audit category:
  • 52missing controlled_by
Audit category:
  • 29inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

804 results

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Clear Filters
ChIP-seq
tissue
liver37
left cardiac atrium35
tibial nerve24
heart left ventricle23
kidney20
primary cell
monocyte84
pancreatic endocrine cell23
pancreatic ductal cell13
skeletal muscle myoblast12
endothelial cell of umbilical vein10
in vitro differentiated cells
adipocyte25
neural progenitor cell13
hepatocyte12
pancreatic endoderm9
definitive endodermal cell4
cell line
HepG213
EndoC_BH112
Panc16
GM128781
stem cell
hESC2
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