Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 410ChIP-seq
Assay category
  • 410DNA binding
Target of assay
  • 804histone modification
  • 803histone
  • 448transcription factor
  • 410narrow histone mark
  • 392broad histone mark
  • 100RNA binding protein
  • 88recombinant protein
  • 34chromatin remodeller
  • 12control
  • 5other context
  • 5other post-translational modification
Date released
  • 119October, 2019
  • 52August, 2017
  • 42May, 2021
  • 33May, 2019
  • 28November, 2017
  • 22April, 2019
  • 19May, 2020
  • 15December, 2017
  • 15May, 2024
  • 15September, 2018
  • 11June, 2019
  • 11October, 2018
  • 9August, 2021
  • 8February, 2018
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 1October, 2017
Available data
  • 408bigWig
  • 398bed narrowPeak
  • 393bam
  • 148bigBed narrowPeak
  • 135tagAlign
  • 108fastq
  • 19bed broadPeak
  • 13bed bed3+
  • 13bigBed broadPeak
  • 1tagAlign bed3+
Organism
  • 408Homo sapiens
Biosample type
  • 251tissue
  • 102primary cell
  • 40in vitro differentiated cells
  • 16cell line
  • 1stem cell
Organ
  • 107brain
  • 67pancreas
  • 48epithelium
  • 41liver
  • 39heart
  • 25vasculature
  • 24blood vessel
  • 17connective tissue
  • 15kidney
  • 13limb
  • 8nerve
  • 7embryo
  • 6artery
  • 5musculature of body
  • 5vein
  • 2spleen
  • 1adipose tissue
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1pituitary gland
Project
  • 366AMP
  • 44T1D
Genome assembly (visualization)
  • 411hg19
  • 410GRCh38
Lab
  • 355AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 28missing controlled_by
Audit category:
  • 15inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
BIOSAMPLE
ASSAY

410 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
tissue
liver26
left cardiac atrium15
islet of Langerhans10
kidney10
heart left ventricle8
primary cell
monocyte40
pancreatic endocrine cell12
pancreatic ductal cell7
skeletal muscle myoblast6
endothelial cell of umbilical vein5
in vitro differentiated cells
adipocyte12
neural progenitor cell7
hepatocyte5
pancreatic endoderm5
Hepatic endoderm2
cell line
EndoC_BH16
HepG26
Panc13
GM128781
stem cell
hESC1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego