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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
Hi-C
2
ChIP-seq
1
FAIRE-seq
1
RRBS
Assay category
5
3D chromatin structure
2
DNA binding
1
DNA accessibility
1
DNA methylation
Target of assay
2
broad histone mark
2
histone
2
histone modification
Date released
4
October, 2019
3
July, 2019
2
March, 2020
November, 2017
Available data
5
bigWig
3
bam
3
hic
2
bed bed3+
2
bed broadPeak
2
bedpe bed3+
2
bigBed broadPeak
2
hdf5
1
bed bedMethyl
1
bed narrowPeak
1
bigBed bedMethyl
1
bigBed narrowPeak
1
tar
Organism
9
Homo sapiens
Biosample type
8
primary cell
1
tissue
Organ
48
liver
39
pancreas
31
epithelium
28
eye
26
connective tissue
21
musculature of body
9
vasculature
8
blood vessel
7
brain
6
heart
6
kidney
5
vein
4
adipose tissue
4
bone element
4
skeleton
1
blood
1
bodily fluid
1
limb
1
pericardium
Project
9
AMP
Genome assembly (visualization)
GRCh38
159
hg19
Lab
9
AMP-T2D consortium
Audit category:
1
audit script error
assembly!
GRCh38
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
November, 2017
BIOSAMPLE
ASSAY
9 results
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Hi-C
ChIP-seq
FAIRE-seq
RRBS
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
tissue
aorta
1
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