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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ATAC-seq
10
RRBS
9
Hi-C
7
ChIP-seq
2
DNase-seq
1
FAIRE-seq
1
pCHi-C
Assay category
48
DNA accessibility
10
DNA methylation
9
3D chromatin structure
7
DNA binding
Target of assay
4
control
2
broad histone mark
2
histone
2
histone modification
1
RNA binding protein
1
transcription factor
Date released
45
May, 2020
13
July, 2019
5
August, 2017
4
October, 2019
3
November, 2017
3
October, 2022
1
February, 2021
1
March, 2020
Available data
59
bigWig
56
bam
10
bed bedMethyl
10
bigBed bedMethyl
7
fastq
5
bed bed3+
5
hic
4
bed broadPeak
4
bed narrowPeak
4
bedpe bed3+
4
bigBed broadPeak
4
bigBed narrowPeak
4
hdf5
3
cool
1
tagAlign
1
tar
Organism
75
Homo sapiens
Biosample type
114
tissue
75
primary cell
71
cell line
28
in vitro differentiated cells
Organ
18
epithelium
10
vasculature
8
blood vessel
7
brain
5
vein
3
connective tissue
3
kidney
3
pancreas
2
liver
1
eye
1
heart
1
musculature of body
Project
72
AMP
3
HPAP
Genome assembly (visualization)
413
hg19
GRCh38
Lab
72
AMP-T2D consortium
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
Audit category:
6
inconsistent ontology term
4
audit script error
assembly!
GRCh38
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
RRBS
Hi-C
ChIP-seq
DNase-seq
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
2
2
1
skeletal muscle myoblast
1
2
2
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
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