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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
6
RRBS
4
ChIP-seq
1
FAIRE-seq
Assay category
7
3D chromatin structure
6
DNA methylation
4
DNA binding
1
DNA accessibility
Target of assay
2
broad histone mark
2
control
2
histone
2
histone modification
Date released
8
July, 2019
4
October, 2019
3
October, 2022
2
November, 2017
1
March, 2020
Available data
7
bigWig
6
bed bedMethyl
6
bigBed bedMethyl
5
bam
5
hic
4
bedpe bed3+
3
cool
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
fastq
2
hdf5
1
bed narrowPeak
1
bigBed narrowPeak
1
tar
Organism
18
Homo sapiens
Biosample type
18
primary cell
12
tissue
3
cell line
Organ
18
epithelium
10
vasculature
8
blood vessel
7
brain
5
vein
3
connective tissue
3
kidney
3
pancreas
2
liver
1
eye
1
heart
1
musculature of body
0
nerve
Project
15
AMP
3
HPAP
Genome assembly (visualization)
227
hg19
GRCh38
Lab
15
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
18 results
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Hi-C
RRBS
ChIP-seq
FAIRE-seq
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
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