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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
20
ATAC-seq
3
Hi-C
2
RRBS
1
pCHi-C
Assay category
73
DNA binding
20
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
47
transcription factor
13
control
13
histone
13
histone modification
11
narrow histone mark
5
RNA binding protein
2
broad histone mark
2
chromatin remodeller
Date released
51
November, 2017
20
May, 2022
15
August, 2021
8
May, 2020
2
July, 2019
1
August, 2017
1
February, 2021
1
March, 2020
Available data
94
bigWig
74
bed narrowPeak
59
bam
52
fastq
32
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
11
tagAlign
3
tar
2
bed bed3+
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
hdf5
Organism
99
Homo sapiens
Biosample type
67
cell line
30
tissue
2
primary cell
Organ
99
liver
39
pancreas
33
epithelium
28
eye
26
connective tissue
21
musculature of body
11
brain
11
vasculature
9
blood vessel
6
heart
6
kidney
5
vein
4
adipose tissue
4
bone element
4
skeleton
1
blood
1
bodily fluid
1
limb
1
pericardium
0
intestine
Project
99
AMP
Genome assembly (visualization)
625
hg19
GRCh38
Lab
64
AMP-T2D consortium
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
Audit category:
7
missing controlled_by
Audit category:
4
inconsistent control read length
2
inconsistent control run_type
assembly!
GRCh38
files.file_type!
vcf
BIOSAMPLE
ASSAY
99 results
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ChIP-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
cell line
HepG2
65
1
1
tissue
liver
8
20
1
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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