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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
Hi-C
2
ATAC-seq
2
pCHi-C
Assay category
19
3D chromatin structure
2
DNA accessibility
Date released
14
March, 2020
3
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
Available data
179
bigWig
152
bed narrowPeak
84
bam
29
tagAlign
27
fastq
24
bed broadPeak
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
12
bigBed narrowPeak
10
bed bed3
7
bed bedgraph
4
bigBed broadPeak
4
hdf5
4
txt
3
cool
2
ibed
2
tsv
1
bedpe
1
tar
Organism
23
Homo sapiens
Biosample type
10
tissue
6
in vitro differentiated cells
4
primary cell
3
cell line
Organ
8
pancreas
6
epithelium
3
heart
2
blood vessel
2
liver
2
musculature of body
2
vasculature
1
vein
Project
20
AMP
3
HPAP
Genome assembly (visualization)
1423
hg19
GRCh38
Lab
19
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
Audit category:
8
inconsistent ontology term
3
audit script error
assembly!
GRCh38
month_released!
November, 2017
BIOSAMPLE
ASSAY
23 results
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Hi-C
ATAC-seq
pCHi-C
tissue
islet of Langerhans
1
1
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
cardiac precursors (cardiac muscle cell)
1
primary cell
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
1
HepG2
1
See all biosamples
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