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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
ChIP-seq
18
ATAC-seq
4
RRBS
2
FAIRE-seq
1
DNase-seq
Assay category
21
DNA accessibility
19
DNA binding
4
DNA methylation
Target of assay
transcription factor
17
control
5
RNA binding protein
2
chromatin remodeller
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
Date released
18
May, 2022
18
November, 2017
7
August, 2017
1
November, 2018
Available data
186
bigWig
141
bed narrowPeak
101
bam
44
fastq
33
tagAlign
26
bed broadPeak
22
hic
21
bedpe bed3+
19
bed bedMethyl
19
bigBed bedMethyl
15
bed bed3+
11
bigBed narrowPeak
10
bed bed3
7
bed bedgraph
5
bigBed broadPeak
4
hdf5
4
txt
3
cool
2
ibed
2
tsv
1
bedpe
1
tar
Organism
44
Homo sapiens
Biosample type
23
tissue
15
cell line
6
primary cell
Organ
20
pancreas
16
liver
3
brain
2
epithelium
2
musculature of body
2
vasculature
1
blood vessel
Project
44
AMP
Genome assembly (visualization)
563
hg19
GRCh38
5
hg18
Lab
26
AMP-T2D consortium
18
Kyle Gaulton, UCSD
Audit category:
2
inconsistent control read length
assembly!
GRCh38
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
44 results
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Clear Filters
ChIP-seq
ATAC-seq
RRBS
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
18
1
skeletal muscle tissue
2
liver
1
pancreas
1
cell line
HepG2
15
primary cell
skeletal muscle myoblast
1
1
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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