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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 149ATAC-seq
  • 136ChIP-seq
  • 26Hi-C
  • 19RRBS
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 2DNase-seq
  • 2total RNA-seq
  • 1snATAC-seq
Assay category
  • 157DNA accessibility
  • 136DNA binding
  • 263D chromatin structure
  • 19DNA methylation
  • 2Transcription
Target of assay
  • 68histone
  • 68histone modification
  • 48transcription factor
  • 36broad histone mark
  • 32narrow histone mark
  • 20control
  • 6RNA binding protein
  • 2chromatin remodeller
Date released
  • 55November, 2017
  • 53May, 2020
  • 45February, 2023
  • 40May, 2021
  • 39May, 2022
  • 29August, 2017
  • 21July, 2019
  • 20August, 2021
  • 16March, 2020
  • 10October, 2019
  • 6February, 2021
  • 3January, 2018
  • 3October, 2022
  • 2November, 2019
  • 1April, 2019
  • 1March, 2019
  • 1May, 2019
  • 1November, 2018
Available data
  • 234bigWig
  • 185bed narrowPeak
  • 138bam
  • 81fastq
  • 44bigBed narrowPeak
  • 39bed broadPeak
  • 33tagAlign
  • 22hic
  • 21bedpe bed3+
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 15bed bed3+
  • 10bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 2tsv
  • 1bedpe
Organism
  • 346Homo sapiens
Biosample type
  • 132tissue
  • 110primary cell
  • 71cell line
  • 33in vitro differentiated cells
Organ
  • 99liver
  • 39pancreas
  • 33epithelium
  • 28eye
  • 26connective tissue
  • 21musculature of body
  • 11brain
  • 11vasculature
  • 9blood vessel
  • 6heart
  • 6kidney
  • 5vein
  • 4adipose tissue
  • 4bone element
  • 4skeleton
  • 1blood
  • 1bodily fluid
  • 1limb
  • 1pericardium
Project
  • 343AMP
  • 3HPAP
Genome assembly (visualization)
  • 3213hg19
  • GRCh38
  • 5hg18
Lab
  • 241AMP-T2D consortium
  • 58Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 16Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
Audit category:
  • 18inconsistent ontology term
  • 5audit script error
Audit category:
  • 7missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

346 results

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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
RRBS
FAIRE-seq
pCHi-C
Capture-C
DNase-seq
total RNA-seq
snATAC-seq
tissue
islet of Langerhans206211
liver20811
skeletal muscle tissue11321
retina15
pigmented layer of retina12
primary cell
CD8-positive, alpha-beta T cell2332
endothelial cell of umbilical vein221
skeletal muscle myoblast212
B cell2
T follicular helper cell2
cell line
HepG26511
EndoC_BH121
GM128781
in vitro differentiated cells
adipocyte81
embryonic stem cell6
chondrocyte5
cardiomyocytes (cardiac muscle cell)21
immature adipocyte2
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