Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
25
ATAC-seq
20
total RNA-seq
8
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
72
DNA binding
34
DNA accessibility
20
Transcription
2
3D chromatin structure
Target of assay
62
transcription factor
22
RNA binding protein
13
recombinant protein
10
histone
10
histone modification
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
316
May, 2021
281
November, 2017
261
August, 2017
260
May, 2020
216
October, 2019
188
February, 2021
186
June, 2019
164
July, 2018
97
May, 2019
79
July, 2019
77
December, 2017
72
September, 2018
70
November, 2018
65
April, 2019
60
August, 2021
58
November, 2019
49
April, 2018
44
February, 2023
42
October, 2018
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
12
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
March, 2019
3
October, 2022
2
January, 2018
Available data
126
bam
106
bed narrowPeak
101
bigWig
70
bigBed narrowPeak
70
fastq
20
tsv
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
2
bedpe bed3+
2
hic
Organism
128
Homo sapiens
Biosample type
68
cell line
55
tissue
5
in vitro differentiated cells
Organ
56
pancreas
49
liver
14
epithelium
12
blood
12
bodily fluid
4
spleen
adipose tissue
2
brain
2
connective tissue
Project
128
AMP
Genome assembly (visualization)
134
GRCh38
128
hg19
Lab
128
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assembly!
hg18
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
128 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
HepG2
42
EndoC_BH1
11
1
1
1
GM12878
12
tissue
islet of Langerhans
19
19
1
liver
4
2
spleen
3
1
body of pancreas
2
brain
2
+ See 2 more…
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
See all biosamples
Download