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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
152
total RNA-seq
84
ATAC-seq
49
single cell RNA-seq
17
DNase-seq
9
RRBS
2
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
238
DNA binding
203
Transcription
102
DNA accessibility
9
DNA methylation
2
3D chromatin structure
Target of assay
227
histone
227
histone modification
118
broad histone mark
109
narrow histone mark
7
RNA binding protein
7
transcription factor
4
control
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
72
September, 2018
July, 2018
47
August, 2017
43
April, 2018
35
June, 2019
25
October, 2019
24
July, 2019
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
February, 2021
3
June, 2018
2
October, 2018
1
March, 2020
Available data
528
bigWig
509
bam
277
bed narrowPeak
201
tsv
169
fastq
99
tagAlign
91
bigBed narrowPeak
31
bed broadPeak
31
bigBed broadPeak
22
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
1
bed bed3
1
bedpe bed3+
1
hdf5
1
hic
1
tar
Organism
555
Homo sapiens
Biosample type
1495
tissue
555
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
190
epithelium
145
pancreas
32
connective tissue
30
vasculature
25
kidney
24
blood vessel
brain
16
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
375
AMP
180
T1D
Genome assembly (visualization)
555
hg19
474
GRCh38
Lab
340
AMP-T2D consortium
215
Kyle Gaulton, UCSD
Audit category:
36
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
July, 2018
organ_slims!
brain
BIOSAMPLE
ASSAY
555 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic alpha cell
7
10
6
5
pancreatic ductal cell
13
4
4
7
pancreatic beta cell
7
10
7
3
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