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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
453
total RNA-seq
19
ChIP-seq
6
ATAC-seq
2
DNase-seq
2
small RNA-seq
Assay category
455
Transcription
19
DNA binding
8
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
444
February, 2021
15
August, 2017
10
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
479
bigWig
477
bam
454
tsv
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
482
Homo sapiens
Biosample type
482
tissue
72
in vitro differentiated cells
26
primary cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
60
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
482
AMP
Genome assembly (visualization)
482
hg19
480
GRCh38
Lab
482
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
audit script error
organ_slims!
heart
BIOSAMPLE
ASSAY
482 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
tissue
adipose tissue
382
1
3
bone tissue
58
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
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