Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
40
total RNA-seq
32
ATAC-seq
2
Capture-C
1
DNase-seq
Assay category
114
DNA binding
40
Transcription
33
DNA accessibility
Target of assay
75
histone
75
histone modification
38
narrow histone mark
36
broad histone mark
34
transcription factor
6
RNA binding protein
5
control
3
chromatin remodeller
Date released
49
August, 2017
36
December, 2017
33
August, 2021
31
February, 2018
21
May, 2021
9
February, 2023
8
February, 2021
2
October, 2019
Available data
165
bam
161
bigWig
118
bed narrowPeak
116
fastq
40
tsv
23
bed bed3+
17
bigBed narrowPeak
14
tagAlign
6
bed bedgraph
5
bed bed3
2
txt
1
bed broadPeak
1
bigBed broadPeak
Organism
189
Homo sapiens
Biosample type
1738
tissue
584
primary cell
469
cell line
189
in vitro differentiated cells
3
stem cell
Organ
71
connective tissue
17
embryo
17
epithelium
14
liver
2
pancreas
1
heart
Project
189
AMP
Genome assembly (visualization)
189
hg19
166
GRCh38
4
hg18
Lab
178
AMP-T2D consortium
6
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
16
inconsistent control read length
audit.ERROR.category!
inconsistent ontology term
audit.WARNING.category!
inconsistent assembly
organ_slims!
skeleton
BIOSAMPLE
ASSAY
189 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
48
4
8
1
1
neural progenitor cell
12
7
10
pancreatic endoderm
13
4
hepatocyte
14
embryonic stem cell
2
2
6
+ See 17 more…
See all biosamples
Download