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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
121
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
121
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
115
histone
115
histone modification
90
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
25
May, 2019
20
June, 2019
17
July, 2019
15
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
157
bigWig
153
bam
139
bed narrowPeak
65
bigBed narrowPeak
43
tagAlign
37
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
17
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
162
Homo sapiens
Biosample type
141
tissue
21
primary cell
Organ
624
liver
603
pancreas
575
connective tissue
425
adipose tissue
250
epithelium
183
heart
164
vasculature
162
brain
159
blood vessel
113
kidney
95
limb
93
artery
70
bone element
65
musculature of body
55
blood
55
bodily fluid
34
eye
31
nerve
25
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
162
AMP
Genome assembly (visualization)
215
GRCh38
162
hg19
Lab
162
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
3
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
files.file_type!
xls
BIOSAMPLE
ASSAY
162 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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