Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
total RNA-seq
4
ATAC-seq
1
DNase-seq
1
Hi-C
1
RRBS
Assay category
17
DNA binding
8
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
3
RNA binding protein
3
transcription factor
Date released
February, 2021
14
November, 2019
6
May, 2021
5
March, 2020
3
June, 2019
2
May, 2019
1
July, 2019
1
October, 2019
Available data
31
bam
31
bigWig
22
bed narrowPeak
10
tsv
5
bigBed narrowPeak
fastq
1
bed bed3+
1
bed bedMethyl
1
bed broadPeak
1
bedpe bed3+
1
bigBed bedMethyl
1
bigBed broadPeak
1
hic
Organism
32
Homo sapiens
Biosample type
24
cell line
7
primary cell
1
in vitro differentiated cells
Organ
32
epithelium
24
pancreas
16
kidney
14
connective tissue
8
musculature of body
5
heart
2
brain
2
embryo
1
adipose tissue
1
limb
1
liver
1
vasculature
Project
28
AMP
4
T1D
Genome assembly (visualization)
32
hg19
28
GRCh38
Lab
32
AMP-T2D consortium
Audit category:
32
inconsistent ontology term
4
audit script error
files.file_type!
fastq
month_released!
February, 2021
BIOSAMPLE
ASSAY
32 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
cell line
EndoC_BH1
13
7
3
1
primary cell
epithelial cell of proximal tubule
2
1
1
kidney epithelial cell
2
Liver fetal (hepatocyte)
1
in vitro differentiated cells
intermediate endothelial cell
1
Download