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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
14
ChIP-seq
3
Hi-C
2
RRBS
1
pCHi-C
Assay category
20
DNA accessibility
14
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
11
transcription factor
3
histone
3
histone modification
2
narrow histone mark
1
RNA binding protein
1
broad histone mark
Date released
20
May, 2022
15
August, 2021
2
July, 2019
1
August, 2017
1
February, 2021
1
March, 2020
Available data
617
bigWig
bam
437
bed narrowPeak
390
fastq
354
bigBed narrowPeak
162
tsv
63
bed broadPeak
63
bigBed broadPeak
42
tagAlign
13
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
bed bed3
1
hdf5
Organism
40
Homo sapiens
Biosample type
22
tissue
16
cell line
2
primary cell
Organ
40
liver
28
epithelium
28
eye
26
connective tissue
22
pancreas
20
musculature of body
9
brain
6
heart
6
vasculature
5
adipose tissue
5
blood vessel
5
kidney
4
bone element
4
skeleton
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
40
AMP
Genome assembly (visualization)
40
hg19
Lab
20
Karen Mohlke, UNC
15
Bing Ren, UCSD
5
AMP-T2D consortium
audit.WARNING.category!
inconsistent assembly
files.file_type!
bam
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ATAC-seq
ChIP-seq
Hi-C
RRBS
pCHi-C
tissue
liver
20
1
1
cell line
HepG2
14
1
1
primary cell
endothelial cell of hepatic sinusoid
1
hepatocyte
1
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