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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
170
DNA binding
89
Transcription
10
DNA accessibility
4
DNA methylation
Target of assay
120
histone modification
119
histone
59
broad histone mark
59
narrow histone mark
47
transcription factor
8
RNA binding protein
3
chromatin remodeller
3
control
Date released
574
February, 2021
281
November, 2017
273
August, 2017
216
October, 2019
215
May, 2020
187
June, 2019
164
July, 2018
141
May, 2021
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
71
November, 2018
65
April, 2019
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
21
May, 2022
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
267
bigWig
252
fastq
249
bam
139
bed narrowPeak
89
tsv
39
bed broadPeak
39
bigBed narrowPeak
36
tagAlign
33
bed bed3+
14
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
268
Homo sapiens
Biosample type
179
tissue
49
in vitro differentiated cells
45
primary cell
Organ
158
pancreas
64
connective tissue
20
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
273
AMP
Genome assembly (visualization)
273
hg19
246
GRCh38
Lab
273
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
lab.title!
Kyle Gaulton, UCSD
month_released!
August, 2021
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
18
1
skeletal muscle tissue
13
2
white adipose tissue
12
pancreas
11
+ See 4 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
13
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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