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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
167
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
4
RRBS
1
FAIRE-seq
Assay category
167
DNA binding
89
Transcription
10
DNA accessibility
4
DNA methylation
Target of assay
120
histone modification
119
histone
59
broad histone mark
59
narrow histone mark
47
transcription factor
8
RNA binding protein
chromatin remodeller
3
control
Date released
574
February, 2021
316
May, 2021
270
August, 2017
266
November, 2017
260
May, 2020
216
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
74
December, 2017
72
September, 2018
65
April, 2019
64
November, 2018
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
28
December, 2018
20
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
0
August, 2022
Available data
264
bigWig
249
fastq
246
bam
136
bed narrowPeak
89
tsv
38
bed broadPeak
38
bigBed narrowPeak
36
tagAlign
33
bed bed3+
13
bigBed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
Organism
265
Homo sapiens
Biosample type
179
tissue
47
in vitro differentiated cells
44
primary cell
Organ
158
pancreas
62
connective tissue
20
liver
17
epithelium
15
adipose tissue
15
musculature of body
Project
270
AMP
Genome assembly (visualization)
270
hg19
243
GRCh38
Lab
270
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
14
inconsistent control read length
inconsistent assembly
1
inconsistent control run_type
audit.WARNING.category!
inconsistent assembly
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
270 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
18
1
skeletal muscle tissue
13
2
white adipose tissue
12
pancreas
11
+ See 4 more…
in vitro differentiated cells
adipocyte
46
1
primary cell
skeletal muscle myoblast
12
2
1
pancreatic endocrine cell
12
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
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