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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
364
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
364
DNA binding
12
DNA accessibility
Target of assay
333
transcription factor
84
recombinant protein
56
RNA binding protein
26
histone
26
histone modification
19
chromatin remodeller
14
narrow histone mark
12
broad histone mark
2
other context
2
other post-translational modification
Date released
228
November, 2017
49
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
491
bigWig
483
bam
376
bed narrowPeak
341
fastq
327
bigBed narrowPeak
105
tsv
46
bed broadPeak
46
bigBed broadPeak
6
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
376
Homo sapiens
Biosample type
771
tissue
376
cell line
237
primary cell
114
in vitro differentiated cells
Organ
280
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
374
AMP
2
T1D
Genome assembly (visualization)
376
hg19
336
GRCh38
Lab
362
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
inconsistent control read length
8
inconsistent control run_type
audit.WARNING.category!
inconsistent control read length
month_released!
September, 2018
BIOSAMPLE
ASSAY
376 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
279
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
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