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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
124
total RNA-seq
62
ATAC-seq
21
DNase-seq
9
Hi-C
9
RRBS
8
single cell RNA-seq
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
165
DNA binding
134
Transcription
84
DNA accessibility
9
3D chromatin structure
9
DNA methylation
Target of assay
157
histone
157
histone modification
85
broad histone mark
72
narrow histone mark
6
control
5
RNA binding protein
5
transcription factor
Date released
184
May, 2021
90
May, 2020
40
June, 2019
31
July, 2019
26
October, 2019
6
November, 2020
5
April, 2018
5
December, 2019
4
May, 2019
3
August, 2021
3
February, 2021
3
October, 2022
1
August, 2017
1
March, 2020
Available data
595
bigWig
573
bam
287
bed narrowPeak
252
tsv
fastq
101
bigBed narrowPeak
99
tagAlign
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
402
Homo sapiens
Biosample type
1461
tissue
402
primary cell
179
in vitro differentiated cells
163
cell line
Organ
70
epithelium
31
connective tissue
25
kidney
25
vasculature
22
blood vessel
17
vein
13
liver
12
brain
12
musculature of body
10
heart
8
pancreas
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
219
AMP
180
T1D
3
HPAP
Genome assembly (visualization)
402
hg19
307
GRCh38
Lab
215
Kyle Gaulton, UCSD
184
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
35
inconsistent ontology term
4
audit script error
audit.WARNING.category!
inconsistent control run_type
files.file_type!
fastq
BIOSAMPLE
ASSAY
402 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
single cell RNA-seq
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
endothelial cell of umbilical vein
12
2
2
1
epithelial cell of proximal tubule
8
1
1
1
hepatocyte
3
5
1
1
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