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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
397
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
344
transcription factor
85
recombinant protein
59
RNA binding protein
37
histone
37
histone modification
22
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
other post-translational modification
Date released
260
November, 2017
93
February, 2021
50
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
507
bigWig
499
bam
390
bed narrowPeak
357
fastq
341
bigBed narrowPeak
105
tsv
58
bed broadPeak
58
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
520
Homo sapiens
Biosample type
1751
tissue
627
primary cell
520
cell line
297
in vitro differentiated cells
3
stem cell
Organ
320
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
516
AMP
4
T1D
Genome assembly (visualization)
520
hg19
456
GRCh38
Lab
505
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
26
inconsistent control read length
inconsistent control run_type
1
inconsistent assembly
audit.WARNING.category!
inconsistent control run_type
organ_slims!
pituitary gland
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
520 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
312
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
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