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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
21
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
120
DNA binding
23
DNA accessibility
12
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
116
histone
116
histone modification
91
narrow histone mark
25
broad histone mark
5
control
2
RNA binding protein
2
transcription factor
Date released
78
October, 2019
25
May, 2019
19
June, 2019
16
July, 2019
12
November, 2017
6
October, 2017
2
November, 2018
1
February, 2023
Available data
154
bigWig
151
bam
138
bed narrowPeak
62
bigBed narrowPeak
43
tagAlign
34
bed broadPeak
25
bigBed broadPeak
23
bed bed3+
14
fastq
12
tsv
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
159
Homo sapiens
Biosample type
143
tissue
16
primary cell
Organ
658
pancreas
612
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
40
blood
40
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
12
skeleton
8
spleen
2
pericardium
1
pituitary gland
Project
159
AMP
Genome assembly (visualization)
214
GRCh38
159
hg19
Lab
159
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
audit.WARNING.category!
inconsistent control run_type
month_released!
January, 2019
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
159 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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