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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
192
total RNA-seq
84
ATAC-seq
27
ChIP-seq
1
DNase-seq
1
snATAC-seq
Assay category
192
Transcription
86
DNA accessibility
27
DNA binding
Target of assay
27
histone
27
histone modification
27
narrow histone mark
Date released
574
February, 2021
316
May, 2021
277
November, 2017
275
August, 2017
260
May, 2020
217
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
77
December, 2017
72
September, 2018
67
November, 2018
65
April, 2019
60
August, 2021
59
November, 2019
49
April, 2018
47
October, 2018
45
February, 2023
39
May, 2022
32
March, 2020
31
February, 2018
30
December, 2018
26
January, 2019
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
285
bigWig
284
bam
192
tsv
67
bed narrowPeak
27
tagAlign
18
fastq
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
txt
Organism
305
Homo sapiens
Biosample type
209
tissue
96
primary cell
Organ
190
liver
18
pancreas
6
connective tissue
1
musculature of body
Project
260
AMP
45
T1D
Genome assembly (visualization)
305
hg19
213
GRCh38
Lab
222
AMP-T2D consortium
63
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
8
inconsistent ontology term
1
audit script error
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
305 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
snATAC-seq
tissue
liver
143
20
27
islet of Langerhans
18
skeletal muscle tissue
1
primary cell
osteoblast
4
1
1
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
T follicular helper cell
2
2
T-helper 1 cell
2
2
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