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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
53
total RNA-seq
3
Hi-C
Assay category
88
DNA binding
53
Transcription
3
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
May, 2020
5
March, 2020
3
October, 2022
Available data
141
bam
141
bigWig
88
bed narrowPeak
84
tagAlign
53
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
144
Homo sapiens
Biosample type
138
primary cell
4
cell line
2
tissue
Organ
9
pancreas
7
epithelium
Project
AMP
141
T1D
3
HPAP
Genome assembly (visualization)
152
GRCh38
144
hg19
Lab
135
Kyle Gaulton, UCSD
6
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
inconsistent ontology term
3
audit script error
award.project!
AMP
biosample_type!
stem cell
month_released!
June, 2018
May, 2020
BIOSAMPLE
ASSAY
144 results
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ChIP-seq
total RNA-seq
Hi-C
primary cell
monocyte
84
51
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
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