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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
total RNA-seq
57
ChIP-seq
19
ATAC-seq
6
DNase-seq
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
pCHi-C
Assay category
76
Transcription
57
DNA binding
25
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
33
histone
33
histone modification
23
transcription factor
16
broad histone mark
16
narrow histone mark
5
RNA binding protein
2
chromatin remodeller
1
control
Date released
69
February, 2021
49
August, 2017
13
June, 2019
9
February, 2023
6
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
October, 2019
1
May, 2021
Available data
144
bigWig
142
bam
76
tsv
61
bed narrowPeak
52
fastq
20
bed bed3+
17
bigBed narrowPeak
6
bed bed3
6
bed broadPeak
6
bigBed broadPeak
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
163
Homo sapiens
Biosample type
73
in vitro differentiated cells
58
tissue
32
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
163
AMP
Genome assembly (visualization)
163
hg19
142
GRCh38
Lab
159
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
13
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
award.project!
LungMap
organ_slims!
adipose tissue
gonad
BIOSAMPLE
ASSAY
163 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Capture-C
Hi-C
RRBS
pCHi-C
in vitro differentiated cells
adipocyte
4
48
8
1
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
cardiac fibroblast
1
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tissue
bone tissue
58
primary cell
osteoblast
5
2
1
1
cardiac fibroblast
3
2
1
mesenchymal stem cell
6
pancreatic stellate cell
4
brain pericyte
1
1
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