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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
60
ChIP-seq
38
DNase-seq
8
ATAC-seq
4
total RNA-seq
2
Hi-C
1
FAIRE-seq
Assay category
60
DNA binding
47
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
60
histone
60
histone modification
41
broad histone mark
19
narrow histone mark
Date released
68
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
1
March, 2020
Available data
111
bam
105
bed narrowPeak
105
bigWig
97
bigBed narrowPeak
40
bed broadPeak
40
bigBed broadPeak
38
bed bed3+
4
tsv
2
hic
1
bedpe bed3+
1
tar
Organism
113
Homo sapiens
Biosample type
96
tissue
17
primary cell
Organ
652
pancreas
625
liver
589
connective tissue
426
adipose tissue
307
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
113
AMP
Genome assembly (visualization)
113
hg19
108
GRCh38
Lab
113
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
award.project!
T1D
BIOSAMPLE
ASSAY
113 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
FAIRE-seq
tissue
tibial nerve
24
2
1
4
tibial artery
18
2
1
muscle of leg
6
13
muscle of arm
17
distal epiphysis of femur
1
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primary cell
endothelial cell of umbilical vein
12
2
2
1
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