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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
DNase-seq
4
total RNA-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
Assay category
36
DNA binding
6
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
36
histone
36
histone modification
23
broad histone mark
13
narrow histone mark
Date released
47
October, 2019
1
March, 2020
Available data
46
bam
46
bigWig
40
bed narrowPeak
39
bigBed narrowPeak
6
bed broadPeak
6
bigBed broadPeak
4
bed bed3+
4
tsv
2
hic
1
bedpe bed3+
1
tar
Organism
48
Homo sapiens
Biosample type
31
tissue
17
primary cell
Organ
652
pancreas
625
liver
589
connective tissue
426
adipose tissue
307
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
skeleton
2
pericardium
1
pituitary gland
Project
48
AMP
Genome assembly (visualization)
48
hg19
43
GRCh38
Lab
48
AMP-T2D consortium
Audit category:
1
audit script error
award.project!
T1D
organ_slims!
skeleton
BIOSAMPLE
ASSAY
48 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
ATAC-seq
FAIRE-seq
tissue
tibial nerve
24
2
4
1
primary cell
endothelial cell of umbilical vein
12
2
2
1
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