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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1217ChIP-seq
  • 1181total RNA-seq
  • 261ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 24Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1305Transcription
  • 1217DNA binding
  • 453DNA accessibility
  • 243D chromatin structure
  • 19DNA methylation
Target of assay
  • 696histone modification
  • 695histone
  • 487transcription factor
  • 367narrow histone mark
  • 327broad histone mark
  • 100RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 574February, 2021
  • 281November, 2017
  • 276August, 2017
  • 217October, 2019
  • 215May, 2020
  • 187June, 2019
  • 180May, 2021
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 60August, 2021
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 39May, 2022
  • 31February, 2018
  • 30December, 2018
  • 27March, 2020
  • 26January, 2019
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 1May, 2023
Available data
  • 2830bigWig
  • 2812bam
  • 1510bed narrowPeak
  • 1304tsv
  • 1008fastq
  • 963bigBed narrowPeak
  • 298bed broadPeak
  • 262bigBed broadPeak
  • 250bed bed3+
  • 154tagAlign
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 19hic
  • 18bedpe bed3+
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 3018Homo sapiens
Biosample type
  • 1753tissue
  • 526cell line
  • 445primary cell
  • 297in vitro differentiated cells
  • 3stem cell
Organ
  • 649pancreas
  • 625liver
  • 589connective tissue
  • 426adipose tissue
  • 304epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 3024AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 3024hg19
  • 2930GRCh38
  • 5hg18
Lab
  • 2919AMP-T2D consortium
  • 58Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 206inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

3024 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue13823
islet of Langerhans292604216211
liver83147202111
bone tissue58
heart left ventricle2932311
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1113131
H1-hESC8
primary cell
CD8-positive, alpha-beta T cell3322
pancreatic beta cell710712
pancreatic alpha cell710612
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
adipocyte484811
cardiomyocytes359
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
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