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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1203ChIP-seq
  • 1181total RNA-seq
  • 254ATAC-seq
  • 186DNase-seq
  • 106single cell RNA-seq
  • 21Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 4pCHi-C
  • 1snATAC-seq
Assay category
  • 1305Transcription
  • 1203DNA binding
  • 446DNA accessibility
  • 213D chromatin structure
  • 19DNA methylation
Target of assay
  • 693histone modification
  • 692histone
  • 476transcription factor
  • 365narrow histone mark
  • 326broad histone mark
  • 99RNA binding protein
  • 85recombinant protein
  • 36chromatin remodeller
  • 32control
  • 5other context
  • 5other post-translational modification
Date released
  • 574February, 2021
  • 281November, 2017
  • 276August, 2017
  • 217October, 2019
  • 215May, 2020
  • 187June, 2019
  • 180May, 2021
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 59November, 2019
  • 49April, 2018
  • 47October, 2018
  • 42February, 2023
  • 40August, 2021
  • 39May, 2022
  • 31February, 2018
  • 30December, 2018
  • 27March, 2020
  • 26January, 2019
  • 12October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 1March, 2019
  • 1May, 2023
Available data
  • 2812bam
  • 2810bigWig
  • 1492bed narrowPeak
  • 1304tsv
  • 1007fastq
  • 963bigBed narrowPeak
  • 297bed broadPeak
  • 262bigBed broadPeak
  • 248bed bed3+
  • 154tagAlign
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 17bedpe bed3+
  • 16hic
  • 12bed bed3
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 2ibed
  • 1tagAlign bed3+
  • 1txt
Organism
  • 2992Homo sapiens
Biosample type
  • 1749tissue
  • 511cell line
  • 445primary cell
  • 290in vitro differentiated cells
  • 3stem cell
Organ
  • 646pancreas
  • 610liver
  • 585connective tissue
  • 426adipose tissue
  • 304epithelium
  • 188heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 128kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 29embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2998AMP
Genome assembly (visualization)
  • 2998hg19
  • 2853GRCh38
  • 5hg18
Lab
  • 2919AMP-T2D consortium
  • 58Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 1Mark McCarthy, Oxford
Audit category:
  • 205inconsistent ontology term
  • 28inconsistent control
  • 2audit script error
  • 1inconsistent replicate
Audit category:
  • 86missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
BIOSAMPLE
ASSAY

2998 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
snATAC-seq
tissue
adipose tissue13823
islet of Langerhans292604016111
liver83147202111
bone tissue58
heart left ventricle2932311
cell line
HepG2308511
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1113131
H1-hESC8
primary cell
CD8-positive, alpha-beta T cell3322
pancreatic beta cell710712
pancreatic alpha cell710612
pancreatic ductal cell134410
pancreatic acinar cell84512
in vitro differentiated cells
cardiomyocytes359
adipocyte48471
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
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