Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 14ChIP-seq
  • 7ATAC-seq
  • 3Hi-C
  • 2Capture-C
Assay category
  • 14DNA binding
  • 7DNA accessibility
  • 33D chromatin structure
Target of assay
  • 11transcription factor
  • 3histone
  • 3histone modification
  • 2narrow histone mark
  • 1RNA binding protein
  • 1broad histone mark
Date released
  • 20August, 2021
  • 3February, 2023
  • 2March, 2019
  • 1October, 2017
Available data
  • 20bigWig
  • 18bed narrowPeak
  • 3bed bedgraph
  • 3hic
  • 3txt
  • 2bed bed3+
  • 1bed broadPeak
  • 1bedpe
  • 1bedpe bed3+
  • 1fastq
Organism
  • 26Homo sapiens
Biosample type
  • 15cell line
  • 7in vitro differentiated cells
  • 4tissue
Organ
  • 15liver
  • 4connective tissue
  • 3pancreas
  • 1kidney
Project
  • 26AMP
Genome assembly (visualization)
  • 77GRCh38
  • 26hg19
Lab
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
  • 1Stephen Parker, UMich
Audit category:
  • 1inconsistent ontology term
BIOSAMPLE
ASSAY

26 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
Capture-C
cell line
HepG2141
in vitro differentiated cells
adipocyte11
osteoblast11
Progenitor cell of Hypothalamus (neural progenitor cell)1
embryonic stem cell1
neuron cell of Hypothalamus (neuron)1
tissue
islet of Langerhans21
kidney1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego