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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 322ChIP-seq
  • 5total RNA-seq
  • 1ATAC-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 322DNA binding
  • 5Transcription
  • 13D chromatin structure
  • 1DNA accessibility
Target of assay
  • 288transcription factor
  • 78recombinant protein
  • 51RNA binding protein
  • 20chromatin remodeller
  • 18histone
  • 18histone modification
  • 13control
  • 9broad histone mark
  • 9narrow histone mark
  • 2other context
  • 2other post-translational modification
Date released
  • 266November, 2017
  • 42November, 2018
  • 15August, 2021
  • 5January, 2019
  • 2February, 2021
Available data
  • 327bigWig
  • 314bam
  • 313fastq
  • 304bed narrowPeak
  • 289bigBed narrowPeak
  • 58bed broadPeak
  • 58bigBed broadPeak
  • 12tagAlign
  • 5tsv
  • 3tar
  • 1bed bed3
  • 1bed bed3+
  • 1bedpe bed3+
  • 1hic
Organism
  • 330Homo sapiens
Biosample type
  • 330cell line
Organ
  • 330liver
Project
  • 330AMP
Genome assembly (visualization)
  • 330hg19
  • 268GRCh38
Lab
  • 315AMP-T2D consortium
  • 15Bing Ren, UCSD
Audit category:
  • 1inconsistent replicate
Audit category:
  • 12missing controlled_by
Audit category:
  • 26inconsistent control read length
  • 8inconsistent control run_type
BIOSAMPLE
ASSAY

330 results

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