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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
260
total RNA-seq
42
ATAC-seq
31
ChIP-seq
6
single cell RNA-seq
2
Hi-C
1
DNase-seq
1
FAIRE-seq
1
RRBS
Assay category
266
Transcription
44
DNA accessibility
31
DNA binding
2
3D chromatin structure
1
DNA methylation
Target of assay
22
histone
22
histone modification
12
narrow histone mark
10
broad histone mark
7
transcription factor
2
RNA binding protein
2
control
Date released
118
August, 2017
116
July, 2018
39
November, 2019
36
May, 2021
18
May, 2022
6
April, 2018
4
March, 2020
3
March, 2019
2
September, 2017
1
July, 2019
1
October, 2017
Available data
330
bam
300
bigWig
267
tsv
141
fastq
59
bed narrowPeak
21
bed bed3+
7
bed broadPeak
6
tagAlign
2
bigBed narrowPeak
2
hic
1
bed bedMethyl
1
bedpe
1
bedpe bed3+
1
bigBed bedMethyl
Organism
344
Homo sapiens
Biosample type
344
tissue
Organ
344
pancreas
Project
342
AMP
2
T1D
Genome assembly (visualization)
344
hg19
314
GRCh38
Lab
322
AMP-T2D consortium
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
BIOSAMPLE
ASSAY
344 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
DNase-seq
FAIRE-seq
RRBS
tissue
islet of Langerhans
260
42
31
6
2
1
1
1
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