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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
917
total RNA-seq
391
ChIP-seq
151
DNase-seq
137
ATAC-seq
16
small RNA-seq
15
Hi-C
2
Capture-C
2
FAIRE-seq
2
pCHi-C
1
snATAC-seq
Assay category
933
Transcription
391
DNA binding
291
DNA accessibility
15
3D chromatin structure
Target of assay
378
histone
378
histone modification
219
narrow histone mark
159
broad histone mark
13
transcription factor
7
RNA binding protein
Date released
478
February, 2021
171
October, 2019
170
May, 2020
147
June, 2019
127
May, 2021
114
July, 2018
93
May, 2019
65
April, 2019
54
July, 2019
45
February, 2023
45
November, 2019
34
August, 2021
24
March, 2020
21
May, 2022
20
August, 2017
14
October, 2018
6
November, 2017
3
March, 2019
2
January, 2018
1
May, 2023
Available data
1915
bam
1903
bigWig
1045
tsv
910
bed narrowPeak
510
bigBed narrowPeak
fastq
217
bed bed3+
197
bed broadPeak
161
bigBed broadPeak
122
tagAlign
15
bedpe bed3+
15
hic
10
bed bed3
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
4
txt
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
1634
Homo sapiens
Biosample type
1455
tissue
primary cell
179
in vitro differentiated cells
cell line
Organ
485
connective tissue
403
adipose tissue
227
pancreas
205
liver
134
brain
113
heart
96
limb
91
kidney
70
blood vessel
70
bone element
70
vasculature
59
musculature of body
31
nerve
30
eye
27
artery
18
ureter
16
epithelium
12
skeleton
2
embryo
1
pituitary gland
Project
1632
AMP
2
T1D
Genome assembly (visualization)
1718
GRCh38
1634
hg19
Lab
1598
AMP-T2D consortium
20
Karen Mohlke, UNC
7
Struan F.A. Grant, CHOP
5
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
Audit category:
110
inconsistent ontology term
1
audit script error
biosample_type!
cell line
primary cell
files.file_type!
bed bedMethyl
fastq
BIOSAMPLE
ASSAY
1634 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
Hi-C
Capture-C
FAIRE-seq
pCHi-C
snATAC-seq
tissue
adipose tissue
382
3
islet of Langerhans
169
8
23
2
liver
147
32
20
1
1
bone tissue
58
heart left ventricle
3
29
3
2
1
+ See 138 more…
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
12
10
cardiac precursors (cardiac muscle cell)
19
1
1
adipocyte
4
8
1
induced pluripotent stem cell
9
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