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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1175total RNA-seq
  • 898ChIP-seq
  • 248ATAC-seq
  • 184DNase-seq
  • 106single cell RNA-seq
  • 24Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 3pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1299Transcription
  • 898DNA binding
  • 438DNA accessibility
  • 243D chromatin structure
  • 19DNA methylation
Target of assay
  • 747histone modification
  • 746histone
  • 392narrow histone mark
  • 353broad histone mark
  • 135transcription factor
  • 38RNA binding protein
  • 19control
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 481February, 2021
  • 311May, 2021
  • 276August, 2017
  • 260May, 2020
  • 197October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 77December, 2017
  • 72September, 2018
  • 65April, 2019
  • 49April, 2018
  • 47October, 2018
  • 45February, 2023
  • 45November, 2019
  • 39May, 2022
  • 37August, 2021
  • 31February, 2018
  • 25March, 2020
  • 17November, 2018
  • 15November, 2017
  • 13October, 2017
  • 7September, 2017
  • 6January, 2019
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3December, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 2January, 2018
  • 1May, 2023
Available data
  • 2499bigWig
  • 2489bam
  • 1297tsv
  • 1198bed narrowPeak
  • 641fastq
  • 612bigBed narrowPeak
  • 247bed bed3+
  • 239bed broadPeak
  • 221tagAlign
  • 203bigBed broadPeak
  • 20hic
  • 19bed bedMethyl
  • 19bedpe bed3+
  • 19bigBed bedMethyl
  • 11bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2677Homo sapiens
Biosample type
  • 1755tissue
  • 628primary cell
  • cell line
  • 297in vitro differentiated cells
  • 3stem cell
Organ
  • 600pancreas
  • 589connective tissue
  • 426adipose tissue
  • 295liver
  • 259epithelium
  • 164brain
  • 124heart
  • 117kidney
  • 101vasculature
  • 96limb
  • 95blood vessel
  • 73musculature of body
  • 70bone element
  • 34eye
  • 31nerve
  • 29artery
  • 21embryo
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 2pericardium
  • 1pituitary gland
Project
  • 2498AMP
  • 182T1D
  • 3HPAP
Genome assembly (visualization)
  • 2683hg19
  • 2663GRCh38
  • 5hg18
Lab
  • 2410AMP-T2D consortium
  • 238Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 154inconsistent ontology term
  • 27inconsistent control
  • 5audit script error
Audit category:
  • 74missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

2683 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans260314216211
liver14783202111
bone tissue58
heart left ventricle3292311
primary cell
monocyte538415
CD8-positive, alpha-beta T cell4332
pancreatic beta cell1077121
pancreatic alpha cell1076121
pancreatic ductal cell413410
in vitro differentiated cells
adipocyte448811
cardiomyocytes593
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm413
stem cell
hESC3
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