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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
104
total RNA-seq
13
ATAC-seq
3
Hi-C
2
DNase-seq
1
pCHi-C
Assay category
410
DNA binding
104
Transcription
15
DNA accessibility
3
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
39
histone
39
histone modification
30
chromatin remodeller
20
narrow histone mark
19
broad histone mark
14
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
93
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
3
December, 2017
1
January, 2018
Available data
519
bigWig
512
bam
402
bed narrowPeak
370
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
6
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
533
Homo sapiens
Biosample type
tissue
530
cell line
primary cell
in vitro differentiated cells
3
stem cell
Organ
330
liver
64
artery
64
blood vessel
64
heart
64
vasculature
58
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
529
AMP
4
T1D
Genome assembly (visualization)
533
hg19
467
GRCh38
1
hg18
Lab
518
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
28
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
primary cell
tissue
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
533 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
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stem cell
hESC
3
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