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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
DNase-seq
79
ChIP-seq
Assay category
182
DNA accessibility
79
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
164
June, 2019
64
November, 2017
14
August, 2017
9
November, 2018
9
October, 2019
1
November, 2020
Available data
2757
bigWig
2729
bam
1467
bed narrowPeak
1270
tsv
946
bigBed narrowPeak
890
fastq
297
bed broadPeak
261
bigBed broadPeak
225
bed bed3+
221
tagAlign
19
bed bedMethyl
19
bigBed bedMethyl
18
hic
15
bedpe bed3+
7
bed bed3
5
hdf5
4
tar
3
cool
1
bedpe
1
tagAlign bed3+
1
txt
Organism
261
Homo sapiens
Biosample type
160
tissue
59
cell line
42
primary cell
in vitro differentiated cells
Organ
71
kidney
63
liver
36
limb
33
musculature of body
28
brain
27
heart
18
ureter
16
epithelium
16
vasculature
12
blood vessel
7
connective tissue
5
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
261
AMP
Genome assembly (visualization)
266
GRCh38
261
hg19
Lab
261
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
in vitro differentiated cells
month_released!
December, 2019
BIOSAMPLE
ASSAY
261 results
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DNase-seq
ChIP-seq
tissue
muscle of arm
17
heart
16
brain
14
kidney
13
muscle of leg
13
+ See 28 more…
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
choroid plexus epithelial cell
1
2
+ See 14 more…
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