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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
13
total RNA-seq
8
Hi-C
4
ATAC-seq
Assay category
48
DNA binding
13
Transcription
8
3D chromatin structure
4
DNA accessibility
Target of assay
33
histone
33
histone modification
19
broad histone mark
15
transcription factor
14
narrow histone mark
11
RNA binding protein
Date released
548
February, 2021
281
November, 2017
260
May, 2020
227
August, 2017
227
May, 2021
209
October, 2019
187
June, 2019
164
July, 2018
97
May, 2019
91
July, 2019
72
September, 2018
71
November, 2018
65
April, 2019
54
November, 2019
49
April, 2018
47
October, 2018
39
December, 2017
39
May, 2022
33
February, 2023
30
December, 2018
27
August, 2021
26
January, 2019
26
March, 2020
13
October, 2017
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2019
3
October, 2022
1
May, 2023
Available data
65
bigWig
61
bam
48
bed narrowPeak
45
bigBed narrowPeak
33
fastq
15
tsv
8
bedpe bed3+
8
hic
Organism
73
Homo sapiens
Biosample type
63
tissue
7
cell line
in vitro differentiated cells
3
primary cell
Organ
53
pancreas
8
epithelium
5
adipose tissue
5
connective tissue
4
heart
4
musculature of body
3
blood vessel
3
vasculature
2
liver
1
vein
Project
68
AMP
5
T1D
Genome assembly (visualization)
73
hg19
61
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
in vitro differentiated cells
month_released!
February, 2020
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
tissue
body of pancreas
25
endocrine pancreas
14
islet of Langerhans
2
2
psoas muscle
2
2
omental fat pad
3
+ See 6 more…
cell line
EndoC_BH1
1
2
2
early embryonic cell
2
primary cell
pancreatic acinar cell
2
endothelial cell of umbilical vein
1
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