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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1186ChIP-seq
  • 1152total RNA-seq
  • 219ATAC-seq
  • 185DNase-seq
  • 106single cell RNA-seq
  • 23Hi-C
  • 19RRBS
  • 18small RNA-seq
  • 5FAIRE-seq
  • 2pCHi-C
  • 1snATAC-seq
Assay category
  • 1276Transcription
  • 1186DNA binding
  • 410DNA accessibility
  • 233D chromatin structure
  • 19DNA methylation
Target of assay
  • 707histone modification
  • 706histone
  • 450transcription factor
  • 371narrow histone mark
  • 335broad histone mark
  • 94RNA binding protein
  • 85recombinant protein
  • 33chromatin remodeller
  • 27control
  • 5other context
  • 5other post-translational modification
Date released
  • 548February, 2021
  • 281November, 2017
  • 260May, 2020
  • 227August, 2017
  • 227May, 2021
  • 209October, 2019
  • 187June, 2019
  • 164July, 2018
  • 97May, 2019
  • 91July, 2019
  • 72September, 2018
  • 71November, 2018
  • 65April, 2019
  • 54November, 2019
  • 49April, 2018
  • 47October, 2018
  • 39December, 2017
  • 39May, 2022
  • 33February, 2023
  • 30December, 2018
  • 27August, 2021
  • 26January, 2019
  • 26March, 2020
  • 13October, 2017
  • 7September, 2017
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3January, 2018
  • 3June, 2018
  • 3March, 2019
  • 3October, 2022
  • 1May, 2023
Available data
  • 2762bigWig
  • 2734bam
  • 1467bed narrowPeak
  • 1275tsv
  • 946bigBed narrowPeak
  • 890fastq
  • 297bed broadPeak
  • 261bigBed broadPeak
  • 225bed bed3+
  • 221tagAlign
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18hic
  • 15bedpe bed3+
  • 7bed bed3
  • 5hdf5
  • 4tar
  • 3cool
  • 1bedpe
  • 1tagAlign bed3+
  • 1txt
Organism
  • 2910Homo sapiens
Biosample type
  • 1755tissue
  • 628primary cell
  • 530cell line
  • in vitro differentiated cells
  • 3stem cell
Organ
  • 656pancreas
  • 611liver
  • 516connective tissue
  • 426adipose tissue
  • 291epithelium
  • 187heart
  • 165vasculature
  • 164brain
  • 159blood vessel
  • 129kidney
  • 96limb
  • 93artery
  • 73musculature of body
  • 70bone element
  • 55blood
  • 55bodily fluid
  • 34eye
  • 31nerve
  • 18ureter
  • 17vein
  • 14spleen
  • 12skeleton
  • 8embryo
  • 2pericardium
  • 1pituitary gland
Project
  • 2727AMP
  • 186T1D
  • 3HPAP
Genome assembly (visualization)
  • 2916hg19
  • 2862GRCh38
  • 1hg18
Lab
  • 2640AMP-T2D consortium
  • 233Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 3Klaus Kaestner, Upenn
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 106inconsistent ontology term
  • 28inconsistent control
  • 5audit script error
  • 1inconsistent replicate
Audit category:
  • 81missing controlled_by
Audit category:
  • 39inconsistent control read length
  • 9inconsistent control run_type
  • 4inconsistent assembly
biosample_type!
  • in vitro differentiated cells
BIOSAMPLE
ASSAY

2916 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
Hi-C
RRBS
small RNA-seq
FAIRE-seq
pCHi-C
snATAC-seq
tissue
adipose tissue13823
islet of Langerhans312604216211
liver83147202111
bone tissue58
heart left ventricle2932311
primary cell
monocyte845315
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7107121
pancreatic alpha cell7106121
pancreatic ductal cell134410
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1133331
H1-hESC8
stem cell
hESC3
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