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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
640
ChIP-seq
158
DNase-seq
4
FAIRE-seq
2
ATAC-seq
Assay category
640
DNA binding
164
DNA accessibility
Target of assay
391
transcription factor
244
histone
244
histone modification
152
broad histone mark
92
narrow histone mark
82
RNA binding protein
78
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
252
November, 2017
147
June, 2019
93
May, 2019
71
November, 2018
64
April, 2019
October, 2019
50
December, 2017
45
October, 2018
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2072
bam
2066
bigWig
1115
bed narrowPeak
993
tsv
804
bigBed narrowPeak
782
fastq
251
bed broadPeak
215
bigBed broadPeak
214
bed bed3+
72
tagAlign
14
bedpe bed3+
14
hic
11
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
4
txt
3
tar
2
ibed
1
bedpe
Organism
798
Homo sapiens
Biosample type
446
tissue
343
cell line
primary cell
15
in vitro differentiated cells
Organ
352
liver
86
heart
86
kidney
60
pancreas
54
blood
54
bodily fluid
54
brain
42
blood vessel
42
vasculature
38
limb
38
musculature of body
18
ureter
14
epithelium
13
spleen
10
connective tissue
9
adipose tissue
5
artery
3
eye
Project
804
AMP
Genome assembly (visualization)
839
GRCh38
804
hg19
Lab
804
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
30
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
month_released!
May, 2020
October, 2019
BIOSAMPLE
ASSAY
804 results
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ChIP-seq
DNase-seq
FAIRE-seq
ATAC-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
body of pancreas
26
2
heart
7
16
+ See 40 more…
cell line
HepG2
289
GM12878
54
in vitro differentiated cells
hepatocyte
14
adipocyte
1
See all biosamples
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