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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
469
ChIP-seq
Assay category
469
DNA binding
Target of assay
469
histone
469
histone modification
432
transcription factor
261
narrow histone mark
208
broad histone mark
85
recombinant protein
84
RNA binding protein
33
chromatin remodeller
20
control
5
other context
5
other post-translational modification
Date released
153
October, 2019
89
May, 2019
August, 2017
60
April, 2019
30
December, 2017
30
October, 2018
27
May, 2020
21
November, 2017
16
February, 2018
15
August, 2021
10
November, 2019
7
January, 2019
6
October, 2017
3
March, 2020
2
May, 2021
Available data
467
bigWig
465
bed narrowPeak
462
bam
274
bigBed narrowPeak
103
tagAlign
90
fastq
23
bed broadPeak
14
bigBed broadPeak
10
bed bed3+
1
tagAlign bed3+
Organism
469
Homo sapiens
Biosample type
378
tissue
primary cell
52
in vitro differentiated cells
37
cell line
2
stem cell
Organ
114
brain
67
liver
60
heart
54
blood vessel
54
vasculature
52
pancreas
48
limb
27
epithelium
24
nerve
20
artery
20
kidney
11
embryo
6
musculature of body
6
spleen
1
blood
1
bodily fluid
1
pituitary gland
Project
465
AMP
4
T1D
Genome assembly (visualization)
541
GRCh38
469
hg19
Lab
466
AMP-T2D consortium
3
Bing Ren, UCSD
Audit category:
16
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
21
inconsistent control read length
biosample_type!
primary cell
month_released!
August, 2017
organ_slims!
thymus
BIOSAMPLE
ASSAY
469 results
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Clear Filters
ChIP-seq
tissue
liver
32
heart left ventricle
24
tibial nerve
24
kidney
20
tibial artery
18
+ See 95 more…
in vitro differentiated cells
hepatocyte
12
neural progenitor cell
12
pancreatic endoderm
9
definitive endodermal cell
4
primitive gut cell
4
+ See 6 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
6
GM12878
1
stem cell
hESC
2
See all biosamples
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