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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1127total RNA-seq
  • 1058ChIP-seq
  • 177ATAC-seq
  • 164DNase-seq
  • 18Hi-C
  • 16small RNA-seq
  • 9RRBS
  • 6single cell RNA-seq
  • 4FAIRE-seq
  • 3pCHi-C
  • 2Capture-C
  • 1snATAC-seq
Assay category
  • 1149Transcription
  • 1058DNA binding
  • 346DNA accessibility
  • 183D chromatin structure
  • 9DNA methylation
Target of assay
  • 554histone modification
  • 553histone
  • 477transcription factor
  • 299narrow histone mark
  • 253broad histone mark
  • 90RNA binding protein
  • 85recombinant protein
  • 35chromatin remodeller
  • 22control
  • 5other context
  • 5other post-translational modification
Date released
  • 571February, 2021
  • 272November, 2017
  • 229August, 2017
  • 191October, 2019
  • 170May, 2020
  • 147June, 2019
  • 132May, 2021
  • 116July, 2018
  • 93May, 2019
  • 77December, 2017
  • 71November, 2018
  • 65April, 2019
  • 60July, 2019
  • 59November, 2019
  • 57August, 2021
  • 45February, 2023
  • 45October, 2018
  • 39May, 2022
  • 31February, 2018
  • 31March, 2020
  • 30December, 2018
  • 26January, 2019
  • 13October, 2017
  • 6April, 2018
  • 3January, 2018
  • 3March, 2019
  • 2September, 2017
  • 1May, 2023
Available data
  • 2424bam
  • 2420bigWig
  • 1310bed narrowPeak
  • 1150tsv
  • 861bigBed narrowPeak
  • 782fastq
  • 256bed broadPeak
  • 220bed bed3+
  • 220bigBed broadPeak
  • 139tagAlign
  • 17bedpe bed3+
  • 17hic
  • 11bed bed3
  • 9bed bedMethyl
  • 9bigBed bedMethyl
  • 7bed bedgraph
  • 4txt
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
Organism
  • 2579Homo sapiens
Biosample type
  • 1755tissue
  • primary cell
  • 530cell line
  • 297in vitro differentiated cells
  • 3stem cell
Organ
  • 612liver
  • 555connective tissue
  • 473pancreas
  • 424adipose tissue
  • 178heart
  • 143brain
  • 134blood vessel
  • 134vasculature
  • 104kidney
  • 96limb
  • 91artery
  • 84epithelium
  • 70bone element
  • 61musculature of body
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 30eye
  • 29embryo
  • 18ureter
  • 14spleen
  • 12skeleton
  • 1pericardium
  • 1pituitary gland
Project
  • 2579AMP
  • 6T1D
Genome assembly (visualization)
  • 2591GRCh38
  • 2585hg19
  • 5hg18
Lab
  • 2515AMP-T2D consortium
  • 23Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 1Katalin Susztak, Upenn
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 172inconsistent ontology term
  • 28inconsistent control
  • 1audit script error
  • 1inconsistent replicate
Audit category:
  • 42missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

2585 results

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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
adipose tissue38213
islet of Langerhans260314212161
liver14783202111
bone tissue58
heart left ventricle3292311
cell line
HepG25322111
smooth muscle cell of the coronary artery5248
GM12878541
EndoC_BH1331331
H1-hESC8
in vitro differentiated cells
adipocyte448811
cardiomyocytes593
neural progenitor cell71210
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm413
stem cell
hESC3
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