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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
single cell RNA-seq
2
ChIP-seq
2
Hi-C
1
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
22
DNA accessibility
12
Transcription
2
3D chromatin structure
2
DNA binding
1
DNA methylation
Target of assay
115
histone
histone modification
90
narrow histone mark
25
broad histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
18
June, 2019
15
July, 2019
2
November, 2017
2
November, 2018
1
February, 2023
1
October, 2019
Available data
37
bigWig
35
bam
22
bed bed3+
22
bed narrowPeak
22
bigBed narrowPeak
21
bed broadPeak
21
bigBed broadPeak
12
tsv
4
fastq
2
hdf5
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
29
tissue
10
primary cell
Organ
554
connective tissue
542
liver
516
pancreas
424
adipose tissue
epithelium
126
heart
99
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
47
brain
46
musculature of body
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
39
AMP
Genome assembly (visualization)
45
GRCh38
39
hg19
Lab
39
AMP-T2D consortium
biosample_type!
stem cell
organ_slims!
epithelium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
39 results
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DNase-seq
total RNA-seq
small RNA-seq
single cell RNA-seq
ChIP-seq
Hi-C
ATAC-seq
FAIRE-seq
RRBS
tissue
brain
14
1
1
1
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
diencephalon
1
1
temporal lobe
1
1
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the hippocampus
1
See all biosamples
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