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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
23
DNase-seq
Assay category
79
DNA binding
23
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
17
June, 2019
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1233
bigWig
1220
bam
780
bed narrowPeak
714
fastq
470
bigBed narrowPeak
424
tsv
118
tagAlign
102
bed broadPeak
102
bigBed broadPeak
56
bed bed3+
11
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
txt
2
ibed
Organism
102
Homo sapiens
Biosample type
tissue
59
cell line
42
primary cell
1
in vitro differentiated cells
Organ
60
liver
16
epithelium
11
brain
11
vasculature
7
blood vessel
6
connective tissue
4
kidney
4
vein
2
heart
1
eye
1
musculature of body
1
pancreas
Project
102
AMP
Genome assembly (visualization)
102
hg19
91
GRCh38
Lab
102
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
month_released!
August, 2021
May, 2020
BIOSAMPLE
ASSAY
102 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
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in vitro differentiated cells
adipocyte
1
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