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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 776ChIP-seq
  • 383total RNA-seq
  • 139ATAC-seq
  • 100single cell RNA-seq
  • 25DNase-seq
  • 16Hi-C
  • 10RRBS
  • 4pCHi-C
  • 2Capture-C
  • 2small RNA-seq
  • 1FAIRE-seq
Assay category
  • 776DNA binding
  • 485Transcription
  • 165DNA accessibility
  • 163D chromatin structure
  • 10DNA methylation
Target of assay
  • 399transcription factor
  • 346histone
  • 346histone modification
  • 173broad histone mark
  • 172narrow histone mark
  • 85recombinant protein
  • 78RNA binding protein
  • 34chromatin remodeller
  • 29control
  • 2other context
  • 2other post-translational modification
Date released
  • 278May, 2021
  • 275November, 2017
  • 122February, 2021
  • 96August, 2017
  • 90May, 2020
  • 72September, 2018
  • 59August, 2021
  • 54November, 2018
  • 54October, 2019
  • 48July, 2018
  • 43April, 2018
  • 41December, 2017
  • 40June, 2019
  • 31February, 2018
  • 31July, 2019
  • 27December, 2018
  • 20January, 2019
  • 19November, 2019
  • 14March, 2020
  • 12February, 2023
  • 6November, 2020
  • 5December, 2019
  • 5September, 2017
  • 4May, 2019
  • 3August, 2018
  • 3June, 2018
  • 3October, 2022
  • 2October, 2018
  • 1January, 2018
Available data
  • 1369bigWig
  • 1350bam
  • 821bed narrowPeak
  • 714fastq
  • 484tsv
  • 470bigBed narrowPeak
  • 133tagAlign
  • 102bed broadPeak
  • 102bigBed broadPeak
  • 61bed bed3+
  • 12bedpe bed3+
  • 11hic
  • 10bed bedMethyl
  • 10bigBed bedMethyl
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 3txt
  • 2ibed
Organism
  • 1458Homo sapiens
Biosample type
  • tissue
  • 628primary cell
  • 530cell line
  • 297in vitro differentiated cells
  • 3stem cell
Organ
  • 357liver
  • 299epithelium
  • 245pancreas
  • 107connective tissue
  • 95vasculature
  • 89blood vessel
  • 75heart
  • 66artery
  • 55blood
  • 55bodily fluid
  • 37kidney
  • 29embryo
  • 21brain
  • 17vein
  • 12musculature of body
  • 4eye
  • 2adipose tissue
  • 1pericardium
Project
  • 1271AMP
  • 184T1D
  • 3HPAP
Genome assembly (visualization)
  • 1458hg19
  • 1268GRCh38
  • 5hg18
Lab
  • 1213AMP-T2D consortium
  • 220Kyle Gaulton, UCSD
  • 15Bing Ren, UCSD
  • 7Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
Audit category:
  • 210inconsistent ontology term
  • 4audit script error
  • 1inconsistent control
  • 1inconsistent replicate
Audit category:
  • 61missing controlled_by
Audit category:
  • 50inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
biosample_type!
  • tissue
BIOSAMPLE
ASSAY

1458 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
Hi-C
RRBS
pCHi-C
Capture-C
small RNA-seq
FAIRE-seq
primary cell
monocyte845315
CD8-positive, alpha-beta T cell3342
pancreatic beta cell7107121
pancreatic alpha cell7106121
pancreatic ductal cell134410
cell line
HepG23225111
smooth muscle cell of the coronary artery4528
GM12878541
EndoC_BH1133331
H1-hESC8
in vitro differentiated cells
adipocyte484811
cardiomyocytes359
neural progenitor cell12710
cardiac precursors (cardiac muscle cell)1911
pancreatic endoderm134
stem cell
hESC3
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