Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
362
ChIP-seq
5
total RNA-seq
Assay category
362
DNA binding
5
Transcription
Target of assay
328
transcription factor
78
recombinant protein
60
RNA binding protein
30
chromatin remodeller
16
histone
16
histone modification
13
control
8
broad histone mark
8
narrow histone mark
2
other context
2
other post-translational modification
Date released
266
November, 2017
54
November, 2018
27
December, 2018
20
January, 2019
Available data
517
bigWig
509
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
367
Homo sapiens
Biosample type
367
cell line
294
tissue
226
primary cell
118
in vitro differentiated cells
stem cell
Organ
313
liver
54
blood
54
bodily fluid
Project
367
AMP
Genome assembly (visualization)
367
hg19
321
GRCh38
Lab
367
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
biosample_type!
stem cell
month_released!
May, 2020
BIOSAMPLE
ASSAY
367 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
cell line
HepG2
308
5
GM12878
54
Download