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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
652
ChIP-seq
256
total RNA-seq
100
single cell RNA-seq
97
ATAC-seq
23
DNase-seq
12
Hi-C
9
RRBS
2
pCHi-C
2
small RNA-seq
1
FAIRE-seq
Assay category
652
DNA binding
358
Transcription
121
DNA accessibility
12
3D chromatin structure
9
DNA methylation
Target of assay
361
transcription factor
266
histone
266
histone modification
136
broad histone mark
130
narrow histone mark
85
recombinant protein
71
RNA binding protein
31
chromatin remodeller
23
control
2
other context
2
other post-translational modification
Date released
275
November, 2017
189
May, 2021
96
February, 2021
90
May, 2020
72
September, 2018
54
November, 2018
48
July, 2018
47
August, 2017
46
October, 2019
43
April, 2018
37
June, 2019
30
July, 2019
27
December, 2018
26
August, 2021
20
January, 2019
14
November, 2019
8
March, 2020
6
November, 2020
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
January, 2018
Available data
1110
bigWig
1080
bam
685
bed narrowPeak
593
fastq
450
bigBed narrowPeak
357
tsv
116
tagAlign
100
bed broadPeak
100
bigBed broadPeak
32
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
7
hic
6
bedpe bed3+
5
hdf5
4
tar
3
cool
2
bed bed3
Organism
1154
Homo sapiens
Biosample type
1725
tissue
624
primary cell
530
cell line
297
in vitro differentiated cells
3
stem cell
Organ
343
liver
279
epithelium
243
pancreas
95
vasculature
89
blood vessel
74
heart
66
artery
55
blood
55
bodily fluid
37
kidney
34
connective tissue
21
brain
17
vein
12
musculature of body
8
embryo
eye
2
adipose tissue
1
pericardium
Project
967
AMP
184
T1D
3
HPAP
Genome assembly (visualization)
1154
hg19
997
GRCh38
Lab
921
AMP-T2D consortium
215
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
Audit category:
102
inconsistent ontology term
4
audit script error
1
inconsistent control
1
inconsistent replicate
Audit category:
56
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
organ_slims!
eye
BIOSAMPLE
ASSAY
1154 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
FAIRE-seq
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
+ See 72 more…
cell line
HepG2
322
5
1
1
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
+ See 7 more…
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