Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
280
ChIP-seq
8
total RNA-seq
1
Hi-C
Assay category
280
DNA binding
8
Transcription
1
3D chromatin structure
Target of assay
246
transcription factor
65
recombinant protein
32
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
13
control
9
broad histone mark
9
narrow histone mark
2
other context
2
other post-translational modification
Date released
266
November, 2017
92
February, 2021
54
November, 2018
27
December, 2018
23
August, 2021
20
January, 2019
20
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
288
bigWig
274
bam
266
fastq
261
bed narrowPeak
247
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
12
tagAlign
8
tsv
3
tar
1
bedpe bed3+
1
hic
Organism
289
Homo sapiens
Biosample type
289
cell line
33
in vitro differentiated cells
12
primary cell
7
tissue
Organ
281
liver
8
embryo
Project
289
AMP
Genome assembly (visualization)
289
hg19
225
GRCh38
Lab
274
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
289 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
Hi-C
cell line
HepG2
280
1
H1-hESC
8
Download