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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
52
total RNA-seq
5
ATAC-seq
3
Hi-C
1
DNase-seq
1
pCHi-C
Assay category
345
DNA binding
52
Transcription
6
DNA accessibility
3
3D chromatin structure
Target of assay
304
transcription factor
85
recombinant protein
58
RNA binding protein
26
chromatin remodeller
23
histone
23
histone modification
13
control
13
narrow histone mark
10
broad histone mark
1
other context
1
other post-translational modification
Date released
208
November, 2017
54
November, 2018
29
February, 2021
27
December, 2018
23
August, 2021
20
January, 2019
19
October, 2019
14
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
461
bigWig
445
bam
388
bed narrowPeak
367
fastq
351
bigBed narrowPeak
59
bed broadPeak
bigBed broadPeak
53
tsv
13
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
hdf5
Organism
407
Homo sapiens
Biosample type
1506
tissue
578
primary cell
407
cell line
295
in vitro differentiated cells
3
stem cell
Organ
272
liver
64
artery
64
blood vessel
heart
64
vasculature
57
pancreas
55
blood
55
bodily fluid
52
epithelium
12
kidney
8
embryo
Project
403
AMP
4
T1D
Genome assembly (visualization)
407
hg19
355
GRCh38
Lab
392
AMP-T2D consortium
15
Bing Ren, UCSD
Audit category:
60
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
13
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
files.file_type!
bigBed broadPeak
month_released!
May, 2023
organ_slims!
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BIOSAMPLE
ASSAY
407 results
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ChIP-seq
total RNA-seq
ATAC-seq
Hi-C
DNase-seq
pCHi-C
cell line
HepG2
264
5
1
1
1
GM12878
54
1
EndoC_BH1
13
33
3
1
H1-hESC
8
Panc1
6
1
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